Use the prebuilt Jar file¶
Simply download the latest release of PhenoteFX from the GitHub releases page at https://github.com/monarch-initiative/PhenoteFX/releases.
This is the recommended way of installing for normal users.
Install from Source¶
You only need to install from source if you want to contribute to the development of PhenoteFX yourself. To use PhenoteFX for annotation, it is recommended to download the prebuilt version.
For building PhenoteFX, you will need
The following command downloads the sources of PhenoteFX.
# git clone https://github.com/monarch-initiative/PhenoteFX.git # cd PhenoteFX
You can build PhenoteFX using
$ mvn package
You shuld now be able to start the app with the following command.
$ java -jar target/PhenoteFX.jar
Maven Proxy Settings¶
If you are behind a proxy, you may encounter problems with Maven downloading dependencies.
settings.xml file in your
.m2 maven directory to adjust the settings for your proxy server.
<settings> <proxies> <proxy> <active>true</active> <protocol>http</protocol> <host>proxy.example.com</host> <port>8080</port> <nonProxyHosts>*.example.com</nonProxyHosts> </proxy> </proxies> </settings> END